mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCTTGGGGCCCGCACTCTCG GGGGAGCGGACCCCCGGGCGG CGGTGCTGGGGAGCGGACCCCCGGGCGGGCCACCCCTCCGGCCTCTCTTGGGGCCCGCACTCTCGCTCCGGGCC CGGTGCTGGGGAGCGGACCCCCGGGCGGGCCACCCCTCCGGCCTCTCTTGGGGCCCGCACTCTCGCTCCGGGCCCGCTCCACATCAGCCACTGATACCCACCATGTGGAAATGGCACGGGAGCGCTCTAAGACCGTCACCTCCTTTTACAACCAGTCAGCCATTGACGTCGCAGCGGAGAAGCCTTCAGTCCGCCTCACTCCAACCATGATGCTCTATT 5 0 3' arm Bos_taurus mirnest 100 bta-mir-1343 2e-17 -38.3 (((.((.((((.((((.((((.(((.(((((........))))).))).)))).)))).)))).)).))).... (-38.3)