mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTGTTGTTGTATATGTGGTT TCATATGAAAGAGCATGAG TGGAGTACTGTGTTCTACTCTTCTGTTGTTGTATATGTGGTTTTGAATCTACCAGCAAAGAGAATCTCTTGGATCATATGAAAGAGCATGAGGGTGAAATTGTAAACATC GAAGTAATACCTCAAAAAACTCCAGTCTGGCCCCTCCTGGCGTGGAGTACTGTGTTCTACTCTTCTGTTGTTGTATATGTGGTTTTGAATCTACCAGCAAAGAGAATCTCTTGGATCATATGAAAGAGCATGAGGGTGAAATTGTAAACATCATCCTGAATAAGGACCACAACACAACTCTAAACACAAATTAGATGGAATTGTTATCCAAAGAGGAAACCAGCCGAGGAAGACTCCTTTAAACTGCAGTCTGCCCTTCGTGCTGTCCAGCAACTTACTAGACACAGAAGAAATAGTTGGTGTGATTCTTGAGGAAATGACAGATGGTACTTTGGAACCAAATTTGT 3 2 5' arm Bos_taurus mirnest 100 100 -25.4 ((...(((...(((.(((((((.((((.((...((((((((((.((.(((..........))).))....)))))))))).)).)))).))))))).))).)))..)).. (-25.4)