mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTAGTTGTTTGGTGAAAAGAT CTGCAAACTAAAAACTGACTT AAATCAGAAAAAGAAAATCCAGTAGTTGTTTGGTGAAAAGATCCAGAAGATTTGAACTCCTGATGGAATACAAAATCCTTTGACCATCTGCAAACTAAAAACTGACTTGAGGTTTTTTTTT CCCGGTCCCCATTCACCGGCGGCGACCGGCGGCGGCAGGCAGCGCGTCAGGCGGAGGGAGCCGCCGCCAGGTGTGCAACAGAGGAACATGGCTCAAGAAACTAATCACAGCCAAGTGCCTATGCTTTGTTCCACTGGCTGCGGATTTTATGGAAACCCTCGTACGAACGGCATGTGTTCAGTGTGCTATAAAGAACATCTTCAAAGACAGAATAGTAGTAATGGTAGAATAAGCCCACCTGCGCCTTCTGTCACAAGTCTGTCTGAGTCCTTACCAGTCCAGTGCACAGACGGTAGTGTCCCAGAGGCTCAGTCAGCGCTAGACTCAACAGCTTCATCTGTGCAGCCAAGCCCTGTGTCAAATCAGTCACTTTTATCAGAATCAGTAGCGTCTTCCCAAGTGGACAGTACATCTGTGGACAAAGCAATACCTGAAACAGAAGACCTGCAAGCTTCAGTATCAGAAACGGCACAGCAGGCATCTGAAGAGCAAAGCAAGTCTCTTGAAAAACCAAAACAGAAAAAGAATCGCTGTTTCATGTGCAGAAAGAAAGTGGGACTTACTGGGTTTGAATGCCGGTGTGGAAATGTTTACTGTGGTGTACATCGTTACTCAGATGTACACAATTGCTCTTACAATTACAAAGCTGATGCTGCTGAGAAAATCAGAAAAAGAAAATCCAGTAGTTGTTTGGTGAAAAGATCCAGAAGATTTGAACTCCTGATGGAATACAAAATCCTTTGACCATCTGCAAACTAAAAACTGACTTGAGGTTTTTTTTT 4 2 5' arm Bos_taurus mirnest 100 100 -23.9 ......(((((((((..((.(((((((.((((((....((((.((((.(((((....(((....))).....))))).))))...))))....)))))))))).))).))..))))))))) (-23.9)