mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAATCTGAATGAACTTTTTG AAAAATTTTGCTCAGTTTTCT CTTGAGTTGGCAAAAAATTTTGCTCAGTTTTCTTTCCATAAGATGTTATAGGAAAATCTGAATGAACTTTTTGACCACCCAG CAAATATATTCTATGAATAGATTTGACACCTAAAATGATGTAGGTACAGGTTATTAATTGAAGCATTACTTGTAATATCAAGATTAGAAACAGTCCAATGACCATCAATACAATACCTGTTAAATAAATCATGATGCATTCATGTCTTGAGTTGGCAAAAAATTTTGCTCAGTTTTCTTTCCATAAGATGTTATAGGAAAATCTGAATGAACTTTTTGACCACCCAGTATAAGGGCTTCCCAGGTGGTGCTAGTGGTGAGGAGCCCACCTGCCAATATAGGAGACTCAAGTTCAATCCCTGGGTCAGGAAGTTCTCCTGGAGAAGGAAATGGCAACCCACTCCAACATTTTTGCCTGGGAAATCCCATAGACAGAAGAGCCTGGCAGGCTACAATCTATGGGATCATAAAGAGTCACTTAGTACTCAGTATACTAAGTGACTTCCTGGTAGCAGCTGGTAGGGATCCACCTGCAATGCAGGAGACCCCGGTTCGGTTTCTGGGTCAGGAAGATCTCCTGGAGAAGGGATAGGCTACCTGCTCCAGTCTTCTTGGGCTTCCTTGGTGGTTCAGATGGTGGGGAATCCACCTGCAGTGTGGTAGACCTGGGTTCGATCTCTGGTTTGGGAGGATCCCCTGGAGGAGGGCATGGCCACTCACTCCAGAATTTTTGCCTGGAGGATCCCCATGGGCAGAGGAGCCTGGTGGGCTACAGTCCATGAGGTCGCAAAGGGTCGGACACGACTGAGTGATTAAGCACACCATATTAATGGAAAATTATACAGCTATAAAAAGATAGAAATAAAAAAGAAAGACAATGAGGATGTGCTCTATATTGTACTGATACAGAAAAACCTCCAAGATA 3 2 3' arm Bos_taurus mirnest 100 bta-mir-2285b 0.0002 -16.1 .......(((((((((.(((...(((((((((((..(((...)))....))))))).))))..))).)))))).)))..... (-16.1)