mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAACCTGAGTGAACTTTTTG AAAAGTTTACTCGAGTTATTC AAGAGAAGTACTGTGTTGGCCCAAAAGTTTACTCGAGTTATTCCATAATATCTTACAGAAGAACCTGAGTGAACTTTTTGCCCAATATAGTGACCAAAA GCGGCCGCTTTTTTTTTTTTTTTTCACAAGAGCTTCACCTTTTTAAGTGATGGCAAATAACTCAATGTTTTTAAAAATGTGTCCAAGTTCATTAATACATGTCTGGGCATCTGATTTGGCCCATACCCTCCCCTCCCCAGGCTGCCAGTGTGTGAACCTGAAATGTGAACTCGGTCCCAGACCAGGTGATTAAACCTTTCTCCAGAAAATACATAGACAGATGCCAACTTAAAGAAAGAAGGCAGAAGAACCAAAGAAAGTTCACATTGTTTTTTTTCAAAAGGGGAAGAGCCAAGGTGGAACAGCATCTTCCACCAGGTGGGTCCAGAGTGAGAGGTAAGCACAGTGTCCCTGAGTTTGCTGAGCAGGAAAGCCAGGAAGAAGGAATCTGCATCAGAACACAAGCAGGGGAGCTCAGAGGATGTACGCCTGAATCTCCACTGCACCTATATCCACCCAGGGCAGAGCGCGGAGGCGGCATCCGGTGAAATACTCTTTAGTGTGAGAAGGGCAGAGTTCCACGGAAACAATCAGGAAGAGAAGTACTGTGTTGGCCCAAAAGTTTACTCGAGTTATTCCATAATATCTTACAGAAGAACCTGAGTGAACTTTTTGCCCAATATAGTGACCAAAAAAGAACCTACAGAACTTAAGTTGACCAGACAGGGGCTGGGGTCTTCCTCTCATGCAGAGCCACCTGTGATAAGTCATCTCTCTTTGGAATAACTGCATCGATGCTGGCTGATGGCTGAC 4 0 3' arm Bos_taurus mirnest 100 100 -28.3 ........(((((((((((...(((((((((((((.(((.(((..(((....)))..))).))).)))))))))))))...)))))))))))....... (-28.3)