mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGAAGGTGATGGCGGGGCTGA AGCCCCTCCGTCTTCTCCCCT GACACACCCATCAGCCCCTCCGTCTTCTCCCCTAGCAGCCCCCCGAAGGTGATGGCGGGGCTGAGGGCAGCGA TGAACACCTTGTAGAGCTTGTGAAAGGTCTCATAGATGAAAATGAGCGAGATGAGGAAGGCGAAGATCTCCTGGGTGAAAGGTGAGATGTAGCGGACCAGGAAGCTGCCTTCCGCGGCCACTAGGGCAAGGACGAAGACCACCAGCCAGAGGCCAACCCACACACGGCCCGTGAGATACTCTAAGTCCTGGGCCCGGCAGAACTTGAAGAAGGCTTCTTCGAAGACGAGCAGTGGCCCAGAGAAGCCGACCACGAGCAGCGGCTGGGCCCCCAGCAGAGAAAAGAGGACGCCAAGCACAGCCGTGGACACGATCAGCTCAGACACACCCATCAGCCCCTCCGTCTTCTCCCCTAGCAGCCCCCCGAAGGTGATGGCGGGGCTGAGGGCAGCGAAGTAGATGAAAAGCACGGCGGCCACGCACTGGGAGTGCAGGGCGTCCCGCAGGTCGCTGGGGTAGTGCGGGTACCGGCG 5 0 3' arm Bos_taurus mirnest 100 100 -26.1 ......(((.((((((((.(((((.(((..................))).))))).)))))))))))...... (-26.1)