mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTGTTTGGGTTTGATTTT AGCTAGCTCTAGCAAAGGAA GTGTTTCCTCAAAGCTAGCTCTAGCAAAGGAAGCCATTTTTGTTTGGGTTTGATTTTGGTTGTTTT GCTGAGTTTAACTCAGGCCTGGGAAAAACTGGGGCTGCAAAACCTCACGGGTAGAAGAGAGTGGGTCCAAGGTCAGGGCCAGTTCTCAGGATGCTTGCCAGCCTTGAGGTGACAGGCCCAGACTGCACGTTTGATCGAGGCCAGGCGTCCCAACGAACACGGTCATAACTGGGATTGTTCCTCATTTTCTGTTTTCGTTTTTTTGGTTTTGGTTTTGTGTTTCCTCAAAGCTAGCTCTAGCAAAGGAAGCCATTTTTGTTTGGGTTTGATTTTGGTTGTTTTCTTTTCCTTATTCCAAAAGCTTTACCCCCATTTGAACTTATTACCTTCGGTTCTCGTGAGTGAGGTGACTGCCCTGGAGACTTAGCTCCTCTGTTTATCCACAGAACAGATACAGCACGGGCAGCGGCAGTGCAAGCCACCCCCAGCCACCCCGTGCCACTGTGTCCCAACCCTGACCTGGAGGGACCAGCTCTCGGGGTAAGAGAGGGATCCCGGCTTGCTCAGTGCTCAGCCTCCCTGCTGAGAGGGCCAGCAAGGGTGGTGGCTTTGTTCTCCCCGGACTCTCGGGCGT 3 1 3' arm Bos_taurus mirnest 100 100 -12.5 ........((((((..(((((.((((((((......)))))))).)))))...))))))....... (-12.5)