mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTCGCACGCACACACACACAC GTGTGTGGTCGTGTTCTTC ATCTGTGTGTGGTCGTGTTCTTCCACCAATATGCTCGCACGCACACACACACACA CCTTTTTTGACTGCACAATGATCCCTTGGAGATCTCCTAATGATTACACTGAGTGACTAGAAGTGGATTAGTGGGCTTACATCTGTGTGTGGTCGTGTTCTTCCACCAATATGCTCGCACGCACACACACACACACA 4 2 3' arm Bos_taurus mirnest 100 100 -16.8 ...(((((((((((((((..................))))).)).)))))))).. (-16.8)