mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGACTTCCCTGGTGGTCCAGG CTGAACCACCAGGGAAGCCCA TTTTCAGGGGGAATCTTTACTGCTGAACCACCAGGGAAGCCCAAGACTGAGAAGGGGGACTGATAAACCACCCAGGGACTTCCCTGGTGGTCCAGGGATTAAGACTCTGCGCTTC ATAGCCAGCCAGGCTCCTCTGTCCATGGGACTCTCCAGGCAAGAATACTAGACTGGGTTGCCATGCCCTCCTGCAGGGGGATCTTCCCAACCCAGGCATCGAACTTGTGTCTCGTACATCCCCTGCCTTGCAGGTGGAATCTTTTTTTTTTTTTTTTCAGGGGGAATCTTTACTGCTGAACCACCAGGGAAGCCCAAGACTGAGAAGGGGGACTGATAAACCACCCAGGGACTTCCCTGGTGGTCCAGGGATTAAGACTCTGCGCTTCCGATGCAGGGGGCAGGGG 1 2 3' arm Bos_taurus mirnest tRNA 0.0000004 100 -41.1 .........(((.((((..((.(((.((((((((((((((((....((....))(((.............))).))).))))))))))))).)))))...)))).)))....... (-41.1)