mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGAGCCTCGGTTGGACTCGG GGTCCCCCGACGTCCCCGC CCGCCCAGGCGGAACGATACGGTAGCGCCGCGGGAGCCTCGGTTGGACTCGGATAGCCGGTCCCCCGACGTCCCCGCCGGCGGGCCGTAAACCGCGTTCCCCGGG GGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGTAGGTTCAGACATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTGTAAGTCAGAATCCCGCCCAGGCGGAACGATACGGTAGCGCCGCGGGAGCCTCGGTTGGACTCGGATAGCCGGTCCCCCGACGTCCCCGCCGGCGGGCCGTAAACCGCGTTCCCCGGGGCGCGGAGCGGCACGCCC 3 2 5' arm Bos_taurus mirnest mir-689 0.000000000002 bta-mir-2904-1 7e-27 -52.7 ...(((.((.((((((.((((((..(((((((((.((.((((..((((.(((....))))))).)))).)).)))).))))).)))))).....))))))))))) (-52.7)