mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCTACTGAGCTGATATCAG GGCTCAGTTCAGCAGGAACA TCAGTTGGACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTAGAGC GATGGGGCCAGTTAAGGTGGAGCTGCTGGGGCAGAGGCCGCTGCTGAGCGGTCAGCTCGGGGCCAAGCAGGATTCTGGAGGATAAGGGCCCGCCTGGCCCCAAGGATGCACTTTGTCCTGTTATGAATGCAAACATTCCCGAAGTCTACAGAAATATAAATCCACTAAGTAAACATCTGTCTGAAAGTTCAAATGTATTGAAAGCTGCAGAATTATTAATTTTAAAAATCTAAAACCAAACGAATCATAGAAATTAAGTAAGACTGTGTCAGCAGCAGATGACGTGTGAGTAGAGCCGGGTACTTTCAAAGGAGACGTCCTCTTGTGATTTCCGAGCGCGGTGAACTCTCTCTTGTATTTGCAGTCCAGTCTGTGTCTTCTGCAGCGCCAGTGGAACGAGGCCGAGCGAGCTCCCAGCCGAGGCGCCGCTTCTCCGGGCTGTCAGTTGGACCCGCCCTCCGGTGCCTACTGAGCTGATATCAGTTCTCATTTTACACACTGGCTCAGTTCAGCAGGAACAGGAGTCGAGCCCTAGAGCAAAGCCTTCCTGTTTGTAAGTGCCCAGAGGCCTGGGAGCTGGGACTGCAGCTGCGTGAAGACCGGCCCGAGTGCCCGCAGCAGAGCTGACCGGCAGCGGTGGTGGCCCCTCTGTATGTGTCCTGTGTGTGGGTGTCGGTAGAGTCAGAGTTCTGTTGACACAAGAGAAATGAGCTTCCACCCAAAAAGGCAGAATGCTGTTAGCGCCATGCGTGTGACGTGGGCAGCGCCCACCTCTGTCATGGTGTACTGGCCAGAAAGCAGGCGGAGCGACTGCGGGTCTGAAACAGGCCGCCTCTCTAGTATCTGTCCTGTGAATGAAGCCCAAGTTACAGCCACCGGCTTTCACAGCCGTGTGAGAGCGAAGCAAATGACACACGGTGCAGCTGTAAAGCCCATTCTCAGGGCTGTGAGATGCGCCCTGGTCTCTCCCTGTTCTCCGCTCATGGTCCTCTCTCCAAAGCTGAGAGCAAAGGTTACTTGTTTACAAGAATTCCTCCGTTGTGACCTGGCAGTAAACTTTATTGCTGTTTCCTTTGCAGGAAAGATCACAGCGAGAATCTTTTTCATGCATCTGC 3 1 5' arm Bos_taurus mirnest mir-24 7e-27 rno-mir-3074 5e-43 -26.4 ......((...((..((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).)))).))..))....... (-26.4)