mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGGTCAAACGGAACCAAGT TTGGTCCCCTTCAACCAGCTA GCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCT GGAAAAAAAAAAAAAAAAAAAAAAGAACGAAAGGGATAAAGAGCCAGTGAGCAGACCTGACACAAATAAGGAGAAATGATGATTAAAAAGATGTGCGTGAAGAGAAAAGGAGGAAACAGGAAAAGGGAACAAGTAAGGAGATAAAATAAGGAGTAAGCGCACAAGCTAAATGCTTAGAAAATCACCAGGCAGTTTGGCTGACTGGGAGAAGCGCCATAGCCAGACTCCAAAGGGAACCATCAGAAAGACAGAGGCAGGCGATTTAAGTAGCCAGTTCCTGAGGTAAAAATGAAAAATAAATAAATAAATAAAATAGAAGATGGAAAAGGTGAGAAGCAGGAGAGGGAAAACCCAGAGGAGACACTGGCCCAGAAACCTTTTTAACTTTCTGCAAGAATCTTCAAGGCCCCAAACTAGGCCAAGATTCTGACTGACATTTCTGAGCTCACCAGCTGCTGTTTCCTTGAGAGAATTCTGACAGGAAGGCATAGAAATGCAAGCCAACACTGCTAGCTCTGGAAAAAAAAAAAATCCACGCTCCAAACACCTCCACGGGGCTGGAGCCTGCCAGGGAAGAAGGCATACAGAGGAGGGACCCGGCGGCAACTTTTCCCCAGGCTTGAACCAGGGATGCTCGGGACACACCAAGAATCCTCGCCCTAGAGGCTGCAGTCACCTCCCCCAGGAGCTGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAAAGCCCAGTCCTTGGAGAAACAAAAGAGATTCGCCTTCTGTGGCTGAAAGTACCTACTACCGTTTCTCTTAAGAAAATGACTGATTTTGTTATCACACTCTCATGCTCTCAGGAAGGGAGAAAA 5 0 5' arm Bos_taurus mirnest mir-133 4e-40 mml-mir-133b 2e-41 -36.3 ...(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))).. (-36.3)