mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGTCCCCTTCAACCAGCTA GCTGGTCAAACGGAACCAAGT CCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGC GGAAAAAAAAAAAAAAAAAAAAAAGAACGAAAGGGATAAAGAGCCAGTGAGCAGACCTGACACAAATAAGGAGAAATGATGATTAAAAAGATGTGCGTGAAGAGAAAAGGAGGAAACAGGAAAAGGGAACAAGTAAGGAGATAAAATAAGGAGTAAGCGCACAAGCTAAATGCTTAGAAAATCACCAGGCAGTTTGGCTGACTGGGAGAAGCGCCATAGCCAGACTCCAAAGGGAACCATCAGAAAGACAGAGGCAGGCGATTTAAGTAGCCAGTTCCTGAGGTAAAAATGAAAAATAAATAAATAAATAAAATAGAAGATGGAAAAGGTGAGAAGCAGGAGAGGGAAAACCCAGAGGAGACACTGGCCCAGAAACCTTTTTAACTTTCTGCAAGAATCTTCAAGGCCCCAAACTAGGCCAAGATTCTGACTGACATTTCTGAGCTCACCAGCTGCTGTTTCCTTGAGAGAATTCTGACAGGAAGGCATAGAAATGCAAGCCAACACTGCTAGCTCTGGAAAAAAAAAAAATCCACGCTCCAAACACCTCCACGGGGCTGGAGCCTGCCAGGGAAGAAGGCATACAGAGGAGGGACCCGGCGGCAACTTTTCCCCAGGCTTGAACCAGGGATGCTCGGGACACACCAAGAATCCTCGCCCTAGAGGCTGCAGTCACCTCCCCCAGGAGCTGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCAAAGCCCAGTCCTTGGAGAAACAAAAGAGATTCGCCTTCTGTGGCTGAAAGTACCTACTACCGTTTCTCTTAAGAAAATGACTGATTTTGTTATCACACTCTCATGCTCTCAGGAAGGGAGAAAA 4 0 3' arm Bos_taurus mirnest mir-133 6e-39 mml-mir-133b 4e-40 -36.3 ..(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).))))))). (-36.3)