mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCGGCGGGAGCCCCGGGGAG GTCCGGTGAGCTCTCGCTGGCCC CCAGTGCGTTAACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTAAAGGGCAGGGCGCCCTGCAATGGGTTCGCCCCGATAGAGAGGTCCGTGCCTTGCAAAGGGTCCCGGATCCAGCTGCGTCCGGTGAGCTCTCGCTGGCCCTTGATAATCCGGGGGAGAGTGTGTAAAT CACGCGTCCGAGCCGATCGAAAGGGAGTCGGCTTCAGATCCCCGAATCCGGAGTGGCGGAAATGGGCGCCGCGAGGCGTCCAGTGCGTTAACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTAAAGGGCAGGGCGCCCTGCAATGGGTTCGCCCCGATAGAGAGGTCCGTGCCTTGCAAAGGGTCCCGGATCCAGCTGCGTCCGGTGAGCTCTCGCTGGCCCTTGATAATCCGGGGGAGAGTGTGTAAATCTCGCTTCGGCTCGTACCCATATCCCAATTATGTCTCCACCGTGAACAGCCTGTTCTGTTGCCCCAATGTATGTTAGGGACGTCGGCATTTCCGATTCATATCTTCAGTATGAGTCTCGGCTCTAAGGGCTGGGTCGGTCGGGCTGGGGCGCGAAGCTGGGCTGGGCGCGCGCCGCGGCTGGACAAGGCGACGCCGCCCCCCCCTCG 4 2 5' arm Bos_taurus mirnest 100 bta-mir-2889 0.0006 -77.4 .......(((.(((((.....(((((((...((((((((((((.(((((...((((((((..((.((((..(((((.....))))))))).(((....))).)).)))))((((((.(((((....)))))..))))))..)))...)))))...)))))))))))).........))))))).....))))).))) (-77.4)