mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGTTGCCCTA GGGCTACACTCTATTGGCATG TAGGGCTACACTCTATTGGCATGCAACTTGATCAAATATTTGAGCTGAAATGCCAAAGGAGAGTTGCCCTA 3 0 3' arm Solanum_lycopersicum pmrd 100 sly-MIR399 7e-35 -30.4 ((((((.((.((((.(((((((.((.((..(........)..)).))..))))))).)))).)).)))))) (-30.40)