mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTAGATTCACGCACAAGCTCG CGTTTGTGCGTGAATCTAACA AAGAAATTGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACTCTTTTCATCTGAAAAACTGTTATTGTTTGCTAGATTCACGCACAAGCTCGTAATATGGCTTTTCCAATCTCTG 4 0 3' arm Solanum_lycopersicum pmrd MIR403 0.0001 ptc-MIR403a 0.000006 -46.2 ................(((((((.((((((....((((((((((((((((((((((..(((((....)))))...))...)))....)))))))))))))))))....)))))).)))))))........ (-46.20)