mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAAAAGTTCATTCAGGTTTTT AAACCCAAACGAAATTTTTGA AACAGAACTATTGGGTTGGCTAAAAAGTTCATTCAGGTTTTTCCATACAATCTTACAGAAAAACCCAAACGAAATTTTTGACCAACCCAATACATGAGA TTTTTTTTTTTTTTTTTTGTTTTTACTATAGTGTCATTTTGTAAATATTGGTAGCCTCTCATAGTGACAGGTAGCTGTTGACTATGTTCTCTCTCCCACACACTTGACTGTTAGATGGTATGTTACAATAAAAGAGTCTCAAGTTAAATTCCATCCAGTGTACAAACATGAGATCCCACTCTCTGATCTAAAGTCAAAGACCGGTGTGTGCTTAGTCGCTCAGTCATGTCCCACTCTTTGTTACCCTATGGACAGAGGAGCCTGACGGGCTACAGTCCATGGGGATTCTCCAGGCAAGAATACTGGAATGGGTTGCCATGCCTCCTCCAAGGGAACTTCCCAACCCAGGGTCAAACCCAGGTCTCCTGCATTGCAGGTAGATTCTTTACCCTTGTATTTTACCTTAAAATCTCATTCTGAGGAAGATGTAATGAAGTAGCAATGATAGAGCTAGAGAGCTCTGCAGTGGATTATGGAGCAGAAAACTGAGAAACAGAACTATTGGGTTGGCTAAAAAGTTCATTCAGGTTTTTCCATACAATCTTACAGAAAAACCCAAACGAAATTTTTGACCAACCCAATACATGAGACCAAATGAGCTCTAGACCTCCAGCTCTTTGTTGCCTTCTAAAACTCCTTTGTGCAAGATTAAGTGGGTATGTCACTTCTAACAATAACCTATCTTAAACACTACTCATTTCAGCAATTAAAATGTATTTTTATATTTCTGAAAATGAGTAGACCCTATCATATAGCTCTTGTTAAAGAGGATCAGCACTAAGTAACTAGTCCTGAAGGTAATAATTCGTGATTACTGTATTTTCATGTGTTATTTGACAACCCCTAGAAGAAGGCAATGGCAACCCTCTCCAGTATTCTTGCCTGGAAAATCCCATGGGCGGAGGAGCCTAGTAGGCTGCAGTCCA 4 0 5' arm Bos_taurus mirnest 100 bta-mir-2284x 0.00000002 -28.7 ........(((((((((((.((((((.(((.((..((((((((..............))))))))..)).))).)))))).)))))))))))....... (-28.7)