mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCTCTGTGAGGTCGGCTCA AGCAGGCCTGTCAGGGNCGTT TGAGGTTGGTGGTCCTGACGTTGGCTCTGTGAGGTCGGCTCAAGGTGGGTCTGGATGTTGAGCAGGCCTGTCAGGGNCGTTGTCACCCACACCAGGAGC CTCCCTGTCCATAGGGTCTGGGGTGCTGCCCTCACCACCCCACACTTCCTTCAAAACCACTCCAGTGTCACAACTGAGTGTTCATTTTAGAGACCAGGGCTGCTACCCTCATGGAGTTGTGCATTTCTGTAAACTCAGCCCGGCTGAGCCTCGTCCTTTCCAAACGTGCATGTAAACCCAGGTGGTCTGGACTGAGCCTGTTGCTTGGCGAGCAGCCAGGAGGGCATGAATGCCATCGTTGAACTCAGGGCTGCCGTTTAGGGAGCTCAGAGCAGCATTGATACCAAAAGTTTTTGTTTTTTCGCTTTCTAACAATTTTGTCAGGTGGTGGATTTGAAGCGTAAGCGTATGATTAATAGCTGTGCTCTGTCTTATAGGGGAAATCCCACTGAAGAAGTCTGCGTGCCCCACAGCCAGCAGTTGGGCCAAAGGCACGTGCTGGCCAAAGAATGCTTGTCACCCAAGGCTCCCTCTGGGTAGGGGAGGAAAGAGGTGTCCCCAAAACAGGAATTGAGTCTTTTCCTGTCTTCCCAGACACTTGGTTGGGATAGATGTCATATCCCAGTGGTCCATGAGGCCATCGGTTTTGACCCTGAGGTCCCTTGTCACTTGCCAGCTGGAGGACTGGCTGGGTCCACTGGCCAGCCAAGGGTTCTTGGCAGGGGGCCGTGGCCTTTTCTGCCTGCGCCCTGAGTTGCTGACCTTTGAGGATGGGCCACTGGCTGCACTTGTAGGGGAGTGCCTGGGAAGCTGTTCCTTTTGGCCGACTACTTCCTGGTGCCTCGCCCCACACCCAGCAGCTTCTGCTCAGAGCCCACAGTTCTCTCCTAGCCTCAAGATCACCTTCACCCACCCTCTAAGAGTTCTCAGAGCAATAAAGCATGTCCTGAGCCTTGGCTCCTTCCAGGGCTGAGCGTCTGGGGTTCAGACTCTGCCGGGGGCAACACGAGGGCAGCAGCGCCTGTGAGGTTGGTGGTCCTGACGTTGGCTCTGTGAGGTCGGCTCAAGGTGGGTCTGGATGTTGAGCAGGCCTGTCAGGGNCGTTGTCACCCACACCAGGAGCACGCAGCAGGGGCGGTAGCCGGCGACACTTCCCTCTTTGCCTGGGCAGCAGCCCAGGAGCCTGT 4 0 5' arm Bos_taurus mirnest 100 eca-mir-1842 9e-23 -34.7 .....((((((....(((((.((.(((((..(((((.((((((.((........)).)))))).)))))..))))).)).)))))....)))))).... (-34.7)