mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATCCTGATGATGCTGCAG GCAGGCCT AGAATCCTGATGATGCTGCAGCGGACGACGGCAGGGCGGCAGGAGGAGGAGCTGCTGCTGCCACCTGCCATGCCCAGCTGGGAACAGCCCCTGCAGGCCT 15 0 5' arm Triticum_aestivum pmrd mir-172 0.0003 bdi-MIR172d 0.00002 -45.7 ...............((((((.((.....(((((((((((((.((......)).)))))))..)))))).......((((....)))))))))))).... (-45.70)