mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATCCTGATGATGCTGCAG GCGGCAATGGCAGGGTGTGAGGAGGAGCTGCTGTCACCTTCCATGCCCAGCTAGGAGCACCCCC AGAATCCTGATGATGCTGCAGCGGATGACGATGACGAAGAGAACAGCGGCAATGGCAGGGTGTGAGGAGGAGCTGCTGTCACCTTCCATGCCCAGCTAGGAGCACCCCCCTCAGGCCT 10 56 5' arm Triticum_aestivum pmrd mir-172 0.0004 bdi-MIR172d 0.00002 -36.7 .....(((((...((((((..((.....))....(.....)....)))))).((((.(((((((.(((((.((....))..)))))))))))).))))............)))))... (-36.70)