mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCGGACCAGGCTTCATTCCTC GGAATGTTGGCTGGCTCGAGG GTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTCTCAAATATACA 5 0 3' arm Vitis_vinifera pmrd mir-166 3e-44 vvi-MIR166b 2e-51 -42.41 ((..(((((((((((((..(.((((..(((.((.(((((...................))))).)).)))..)))).)..)))))))))))))...)). (-42.41)