mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA TGGAAGAAGAGGTGATGGCA AGAAAGAGAGATCATCATCATCATCATCATCATCATCATAAGATATGGAAGAAGAGGTGATGGCATCTATAGA GACATAGATTGATATACATTAACAGAGAAGAAGGAGAAAGAGAGATCATCATCATCATCATCATCATCATCATAAGATATGGAAGAAGAGGTGATGGCATCTATAGAAAATCTGAGAAACCCAAGCATTGGACCCATAGACTACTTCTCATTACCAACCTGGAAACTCTATGACAATCCTCATTACTCCTCCACTTGTCTTCCTCCTCATTTCTCAGTCGCTGCGGCCAAGCTCACGTCCATTTTCCGGCCCATGCACGACGATAACG 5 1 5' arm Dioscorea_alata mirnest 100 100 -15.2 ......(((..((((((((.((.((.((...(((.......)))...)).)).))))))))))..)))..... (-15.2)