mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAATCTTGATGATGCTACAC GCAGCATCATCAAGATTCTCA TATTGCCGATGCAGCATCATCAAGATTCTCAACCCCAAAACTTGAGGCAGCGAAGATGGCATCGCTGCCGCGCCGGGCTTTCGCATGTGAATCTTGATGATGCTACACCTGCAAACAA 3 0 3' arm Vitis_vinifera pmrd mir-172 2e-61 vvi-MIR172b 1e-62 -49.8 ..((((.(.((.((((((((((((((((.((..............((((((((........)))))))).......((....)).)).)))))))))))))))).)).).)))).... (-49.80)