mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGGACTGAAGGGAGCTCCT GGGTTCCTTTGCAGCCCAAAAC TGCAGAAATGGGGGTTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCTCT 1 1 3' arm Vitis_vinifera pmrd 100 vvi-MIR319e 4e-56 -40.4 .(.((((.(((((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))))).)))).)... (-40.40)