mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGAAGTGTTTGGGGGAACTC GTTCCCCTGACCACTTCACTG GCCCCCTAGAGTTCCCCTGACCACTTCACTGGGGGATCTTCTGTAATGACTTCCTACTGAAGTGTTTGGGGGAACTCCTGGTGTCAT 4 0 3' arm Vitis_vinifera pmrd mir-395 3e-38 vvi-MIR395l 3e-44 -41.1 ....((..(((((((((..(.(((((((.(((((..((.........))..))))).))))))).)..)))))))))..))...... (-41.10)