mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTTCTCAGGTCGCCCCTG GGAGTGACCTGAGAATCACATG GTGTCCTACAGGAGTGACCTGAGAATCACATGCCCGCATCACCCATCTTTGCTCTCATGTGTTCTCAGGTCGCCCCTGCTGGACTCCC 1 1 3' arm Vitis_vinifera pmrd MIR398 1e-43 vvi-MIR398c 7e-45 -45.8 ..((((..((((.((((((((((((.((((((...(((...........)))...)))))))))))))))))).))))..)))).... (-45.80)