mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGAGTTGCCCTG GGGCACCTCTTTCTTGGCAGG ATCAATCATAGGGCACCTCTTTCTTGGCAGGCACTGGCTCCTATATATGAATATACATAGCTTAGCTGCAGTAAAAAGATGTGACTTGCCAAAGGAGAGTTGCCCTGTGACTGCTTC 3 0 3' arm Vitis_vinifera pmrd mir-399 0.000000002 vvi-MIR399b 5e-62 -48.22 ..((.((((((((((.(((((..(((((((((((..((..(((..((((......))))...)))..))...........))).))))))))..))))).)))))))))).)).... (-48.22)