mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCATCATCATCATCATCATCA GTGGTAATGGTGGTGGTGGAG TGGACACACGCCACCACCATCATCATGCTCACCATCATCATCATCATCATCAACAACAAGAAGGTGGTAATGGTGGTGGTGGAGAGAGTGGAGGTGGAGGCGGCGGTGAAGA TCCCCGGCACGCTTGAACTCCCAAGCGGGCGGTTGCCGTTGGGTTCAATGCTACTCCAACAGCACAACCCTGGTGCCGGTGCCGGCCAGGCAGCGTCACAGCATTTGGGGTTGGGAATGGCGGAGACGAACCTGGGAATGCTTGCAGCTCTGAATGCTTACAACCGAGGTGGAGCTTTGAGCATGAGCTCCGAGCATCACCAACACCACTTGGACACACGCCACCACCATCATCATGCTCACCATCATCATCATCATCATCAACAACAAGAAGGTGGTAATGGTGGTGGTGGAGAGAGTGGAGGTGGAGGCGGCGGTGAAGACCACCAAACAAACTCACAGTGAATCAAAAAGAACTACATTGGTTTACTGGTAATGCTTGCTTGCTTGCTTCTTCTTCTCTTTGCGTTTGGATTTTCTTAAATTTGGTATTTTTTTTTAATATTTATAGTAAAAGAAGTCTACTATTTAAACAAAACTAAAAAAAAAAAAAAGTTAAATTAAATACGTACG 2 0 5' arm Dioscorea_alata mirnest 100 100 -47 ....(((.((((.((.(((((.((((.(((.(((((((((((((.((((((...........)))))).))))))))))))).))).)))).))))).)).))))))).... (-47)