mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAATCTTGATGATGCTGCA TGGCATCATCAAGATTCACA GCGTGGCATCATCAAGATTCACAACCCATCAATCCGAACCACTGATTTGGAATGCATGYATGAGAATCTTGATGATGCTGCAT 4 0 3' arm Zea_mays pmrd mir-172 0.0000000008 zma-MIR172a 4e-41 -37.3 ..(..(((((((((((((((.((...(((((.((((((.......)))))).)).)))..)).)))))))))))))))..).. (-37.30)