mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTGAGAGAGAGAACACAGAC CTGTTTTCTCTCTTTTCAAGA TCTTCAAACCATTTTCGAAAGCCTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTGGCCGCAGTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGCGGCGAAAAGAAGCTACAAGAATAAAAAGTCTGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAA TCTCTTCAAACCATTTTCGAAAGCCTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTGGCCGCAGTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGCGGCGAAAAGAAGCTACAAGAATAAAAAGTCTGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAATGGCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAATGCTATCTTCCGACGCTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTTTCGAGCGGTGGAAGAAGTGGAGCTGTTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAGAAGATT 4 0 5' arm Arabidopsis_thaliana mirnest 100 ath-MIR2936 4e-88 -45 ...........((((((((.....(((((((((((.((((((........(((.((((....((((.(((((((......(((((........)))))...........))))))).))))...))))....)))........)))))).))))))))))).(((......)))..)))))))) (-45)