mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCCAAGGAGACTGCCTGTG CAGGCAAGTCATCCTTGGCTATC TTCAGATAAGGGGCCCGCCCGGACTAGCCAAGGAGACTGCCTGTGATCGAGGCCACAAGGCGAGCAATAAAACGTGCACAAGGTTTTGCCCGAGCCAAGCCAAGCCAAGAAGCCACAGGCAAGTCATCCTTGGCTATCTGGACAGACTCTTATCGCCA GCCTTACCTTTTTCTCCCTCCTGAATGGAAGGTAACAGTGTCACTCACTGCATTTCATAACGTGCTATCTATCTTGACAACTCTGCCTACTGCAGGCTGCAGCTGAAAGAAATGAACAGAACAAGGGGAAATAGTTGTCCTTGGACAAGAAACCTCAGCCCCATTGCACCGGATGGTATGGTCGACCGATCGAAAGCGCGGGATACACTGCTAGCTGCATCTCGTCAGGTCCATCCGTCCATCCTAGATTAACTGAAGAGGAGATGAGCCTAGCATGGAGGATGGAAGCCGCTCAGACTAGCCAAGGAGGCTGCCTGCGGGGACCGCACGCGGTGGAGGCGGGGCCACGCAACGTCCGCAGCAGGAGGCCACAGGCAGCTCATCCTTGGCTACCGAAGCAGAGCTTCCATCGCCATGCCAGGGATCGGTTTCAGATAAGGGGCCCGCCCGGACTAGCCAAGGAGACTGCCTGTGATCGAGGCCACAAGGCGAGCAATAAAACGTGCACAAGGTTTTGCCCGAGCCAAGCCAAGCCAAGAAGCCACAGGCAAGTCATCCTTGGCTATCTGGACAGACTCTTATCGCCACTCTCTAGCACACTGCACACACACAAATCTGTGGCCTTGGATTGGATGCAACGCTCTGCGTGCCCTTCGGCTATTTATACTGTCCAAGTACAGAAACGAGCTGGTGGATCCAAAGCTTTTCTTCCATGACAGAAACGGCCGCAGGTTGCAGCATCGAACATATCCTCAGCTCCTCTCTCTCTCTCTCC 0 2 5' arm Zea_mays mirnest MIR169_5 9e-80 zma-MIR169j 8e-80 -59.2 ....((((((((......(((((.(((((((((((((((((((((.((..(((.....(((..(((........)))....(((((.....)))))..)))..)))..))...))))))).)))).))))))))))))))).....)))))))).... (-59.2)