mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTGAGAGAGAGAACACAGACG TGGTTTTCTCTCTTTTCAAGAA CTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGGGGCGACAAGAAGCTACAAGAATAAAAAGTGGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAAT TCTCTTCAAACCATTTTCGAAAGCCTTGAGAGAGAGAACACAGACGATACCAACTTTCTTCAATCTCGTTGCCGCAGTATAATTATCTCATTCCTCGGATATATCTCTCCTTCTGCGGGGGCGACAAGAAGCTACAAGAATAAAAAGTGGTTTTCTCTCTTTTCAAGAAACCACTTACTTCGAAAATGGCTCGTTCTATCTCTAACGTTAAGATCGTATCTGCTTTCGTCTCTCGTGAACTCTCCAATGCTATCTTCCGACGTGGTTATGCGGCCACGGCGGCGCAAGGGAGCGTTTCGAGCGGTGGAAGAAGTGGAGCTGTTGCTTCGGCTGTGATGAAGAAGAAGGGAGTGGAAGAATCAACCCAGAAGATTTCTTGGGTTCCAGATTCCAAAACCG 3 2 5' arm Arabidopsis_thaliana mirnest 100 ath-MIR2936 1e-88 -37.7 .........(((((((((((.((((((((((((((.((..((........(((.((((....(((((.((((((......(((((........)))))...........)))))).)))))...))))....)))........)).)).))))))).)))))))......))...))))))))) (-37.7)