mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGCGAATGATGAATCATCAT GATGAGTCATCAACGCTAGGC GTTGTTTTTGCTTGCGAATGATGAATCATCATATTTTCGATGAGTCATCAACGCTAGGCATTGTATG AATAATATAAAACATTATAAAAATAATATAAACCATTATATTTGTTGTTTTTGCTTGCGAATGATGAATCATCATATTTTCGATGAGTCATCAACGCTAGGCATTGTATGAGTGATTGTTCCATAGACAATATCTCCATTGTTACTATCTATGACATCACAGTTCTCTTTTATTATGACATCACAAAACACTTTGTCCGTATAAACCCCAGTGTTTCCATCACTTTGTTCCGCAACACTGCCTTCCATAGAAACAACATTAATATTGCTTGTTACTGCTTGGTGGCGCATGGGAGTATAAACCTCGTCACTGCTCACCACACGATGTCTTACTTTCACCACTTGTAGGAGCCCTCGCTTCACTAATACAACAACAACGAACGAGGTTACGATAAATCCGCATAGAAATCCTATAAACACCAATAGTTGGTCTGGTAATCCCTCTGTGCACTGTCGAGCTGCGTTTGTTG 4 2 5' arm Ciona_intestinalis mirnest 100 100 -21.3 ........((((((((..((((((.(((((........))))).)))))).))).)))))....... (-21.3)