mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGCTGCGGGTCCGCGGCTAA AGCCGTAGAGCTGTACGAAA TCCCTCGCGAGGCGCTGCGGGTCCGCGGCTAAAGTCAGCCACCTTCCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGCCGTAGAGCTGTACGAAACTCGAAGG GGGGCCGGGGTAGTCCGGCCGAGCTGCGTCGGGTCGTTCCTGGACTGTTCTCAGACCCGAAGCGGCTCGGCGCGGTTTCGGTCGGGTGCTCCCTCGCGAGGCGCTGCGGGTCCGCGGCTAAAGTCAGCCACCTTCCCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGCCGTAGAGCTGTACGAAACTCGAAGGCGAAATGAAAGTGAATGCCGGCGAGGTCCGGCGGAGGTTGGAGCCCGCCAGCGATGGTGGGCGCACGACCGGCCGATCTTCTCCGCGCTGTCGGCGAGGTCGAGCGAGAGCGTGCAAGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATANGGGCNAAAGACTAATCGAACC 5 1 5' arm Ciona_intestinalis mirnest Intron_gpI 0.00000000003 100 -33.2 ..(((..((((.((.(((((.((.((((((.......(((((......(((((((((........))))...)).)))......))).)).)))))).)).)))))))...)))).))) (-33.2)