mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATGAAGAAGCTGAAGAACAT AAAGTTTCGCTTTCTTCGTATTT AAGACCTTGAAAATGAAGAAGCTGAAGAACATGTAGATGTTTGTGTGGACTTTGATTTTCTTTCAGACCTCAAATCTTCAATTCCATTAACAGAATTAGAAAGTTTCGCTTTCTTCGTATTTCCAGCAG AATGTAAACCCCCAATTCAGTAATTAAACAAAGCTAAACTTACTTAGTGATTTCTAAATTACAAGATATATGCATTAGATATGGGACGATTTTTCTCGAGATGTGTAGTTTCATATACTGGAAGTTCTTCTCTATACCTCTCATTCCCAATTGAAGCAAAATTATCTAATTCAAATAAATCAGAACTTGCATAACTCTCTGCATCTTCATCATCGTCGTCTTCGTAGTCTTGATGAACATCTCTCATTTCATAATCACACTTTTTCTTTTCAAGATTCTTATCTTGATAACTTTTAAGAAACTCTCTTGCTGCTTCTTCGATTTTCCGATTTTTCTCCATTAAATGATACTTGAATTCTTCATTCATTGAAACCACTTTTGATTGCTGCTGCTGCTGTTGTTGTTCATAAATAGATTTTTGTCCACAAGGACGACTATCTTCATCAACAATCACACTAACAGGATAAAATCTAACTGATCTTTTAGTACCATTAGTGGATTTTGCTCCTCTTGAAGATGGAGTTTTGCTTAAACAAGACCTTGAAAATGAAGAAGCTGAAGAACATGTAGATGTTTGTGTGGACTTTGATTTTCTTTCAGACCTCAAATCTTCAATTCCATTAACAGAATTAGAAAGTTTCGCTTTCTTCGTATTTCCAGCAGTGAACAATGAATTTAGAAATGTAGCAAGTCTTCCACCTGGTGAAATTGGTTGTTTTACCTTCTTAAGATCACCATAGATCTTCATAGCTTTGGATTTCGTCTTGTTGAAACCGCCTTCTTGTTTCACTTTCTGAGGAACAGAGCTTATTCTTTCATGTTGATGATGATAATGAG 5 1 5' arm Aquilegia_formosa_x_Aquilegia_pubescens mirnest 100 100 -25.7 .....((.(((((((((((((.(((((....((....((((...(((((.((.((((((((...)))....)))))...)).))))).))))....)).....))))).))))))))).)))).))... (-25.7)