mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGAGCTTCTCGAAGATGTCG GCGTGCTTCGCAAGCTCGCCG CCCTCCGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGGACCAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATGGTAGGCTTCTTGTTGTAGCGGGCAAGCCTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAA TCAAGAAGATCTAATCTTTAGATTTCCGAATCAGAGATAGGTATTTTACATCAGACTATCCAACTTCCAACAAAAATATCAAAATAAAAGATAACGAGAAAGAGATAAAGAGAAGGAGCAAACAAGCGTCCAAACACAACCCTAAATTTTCAGATCAGCTTCAGACAACACCCACAAACCAAATCCAAGATCATTCAAGAACTAGTGAACTTGGTGACGGCCTTGGTGCCCTCCGAGACGGCGTGCTTCGCAAGCTCGCCGGGGAGGACCAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATGGTAGGCTTCTTGTTGTAGCGGGCAAGCCTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAAGAGTTCATGATGCCCATGGCCTTGCTCGAGATCCCGATGTCCGGGTGGACTCCTCTCTCCTCATCATTCGACGTAGGTTCGGCGGAGGCGGCGGAAGGAGAGGGAGAGAGAGATGAAGACGATACTGTCGACGGACACGATGGAGATCCCGGAGGGGGTGACGGTCCGGGTGAAGGCGAAAATGATCGAGGTGGAGGGCCCCCGGGGGAAGCTGGCCCGCAACTTCAAGCACCTCAACCTCGACTTCCAGCTCATCGAGGGGGGCCGCAAGCTCAAGGTCGACGCCTGGTTCGGCTCCCGCAAGACCACCGCCGCCATCCGCACCGCCATCAGCCACGTCCAGAACCTCATCACCGGGGTCACCAAGGGCTACCGCTACAAGATGCGCTTCGTCTACGCCCATTTCCCCATCAACG 1 2 3' arm Elaeis_guineensis mirnest 100 100 -65.3 ........((((((((.(((((.(((((((((.((((((.((((((..(((((((((((.(((((....))))).....)))))))).)))(((.....))).))))))...)))))).)))))))))..)))))))))))))....... (-65.3)