mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATGAGGAGAGGGAGGAGGAG CTTTTATTTTCTCCTCTATA TGGATGAGGAGAGGGAGGAGGAGGAGGTGGACATCTTCTTCAGGCGAGGGCTCTGGTCTCTTTTATATCACTGTAATTACACCAATCTCCTTTAAAACTTCTTCCAGGATCGGAAGAAGAAGGAGTGAAAATTTCCTCTTTTCTTTTATTTTCTCCTCTATA TGGATGAGGAGAGGGAGGAGGAGGAGGTGGACATCTTCTTCAGGCGAGGGCTCTGGTCTCTTTTATATCACTGTAATTACACCAATCTCCTTTAAAACTTCTTCCAGGATCGGAAGAAGAAGGAGTGAAAATTTCCTCTTTTCTTTTATTTTCTCCTCTATATACATACAAACTCTTGTTCTCTTCCAGATCATTAGTGTTTTTGGTCTTATGATCTGGTCTGCTCTTGTATGTAGATAGTTGTTTTGTTTTCTC 4 0 5' arm Elaeis_guineensis mirnest 100 100 -46.7 .....((((((((((.(((((((((((.(((.((.(((....(((....))).((((.....(((((....)))))....))))..((((((.....((((((((......)))))))))))))).))).)).)))))))))))))).)))))))))).... (-46.7)