mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGCGGGAGTGCAGAAAACT TTGTCTGCACTCCCGTTCTTT CTTAATTTCTCTTGTCTGCACTCCCGTTCTTTATAAGCCTGAAGTAAGCCAAAAGAGCGGGAGTGCAGAAAACTGAATGTAA GACATNCGCGCGTCGTTCTACAGGTCTTAATTTCTCTTGTCTGCACTCCCGTTCTTTATAAGCCTGAAGTAAGCCAAAAGAGCGGGAGTGCAGAAAACTGAATGTAAGAGCGCCTGACGTCGTAAACAACCAACAGNAAGGCAAGCTAAATACATCGACCTGACGCGTTTTGCTTCATTCTTTGCTGAGACAAATCTGAGTTCTTGGGTCGTCAGTGTACGAACGGTACTCATCGTCGCAGCTATTACTATTTTAAAGATATTGCTTTAGATATTACGTCAGTTTAACCGCCACCATCGAAGAAATGGACCAACAACAACAACAATCTACAAGTTCCAGTGGTAATACAGCTGGTGAGTGGGCAAAACAGTGTGAAGATGGCTTAAACAACCAAATCAATTTGGAGCTCTATGCCTCTTATGTGTACATGGCTATGGGCCACTACTTTGATCGGGATGATGTTGCCTTGAAAAATGTCTCAAAATTTTTCAAGGAATGCTCCGAAGAGGAGAGAGAGCATGCAAACAAGATGGTTGAGTTCCATAACAGACGAGGTGGAAATACAACATATTTTCTCATCAAGTCTCCAGGACCTTTTGGACCAGACAATTTCAACACCATCAAAGCTATGAAGTGTGCCCTTGCTTTGGAGGTGAATGTCAACAAAAGCTTGTTGGCTTTGCATGAAACAGCTAATGGTGATCCACAGTTCCAAGATTTCATTGAGGCAAACTACTTGCATGAGCAAGTTGAAGCTATCAAACAACTGAAGATTACAT 3 0 3' arm Ciona_intestinalis mirnest 100 cin-mir-4115 3e-25 -32.1 .(((..(((..((.((((((((((((((((((....((.((...)).))..)))))))))))))))))).))..)))..))) (-32.1)