mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGGGGGGGCGGGGAGGGGGG CGGCCTCCGGGCCTCCACCCAGC ATTCATTGCAAAGGGGGGGGCGGGGAGGGGGGGACTCAGTTGCAGTAGTTCTCCAGTTGGTAGAGGGAGCAAATGCTGGTGCAGCACTGATCCACAATGCCACGCTTTTTGCCGGGCAACCTCCAGTGCCAAGGTCTGAAGATCCCCGGCCTCCGGGCCTCCACCCAGCTCCAGTTG TTTTTTTTTTTGGGGCTCATTCAAAGGCTTTATTCATTGCAAAGGGGGGGGCGGGGAGGGGGGGACTCAGTTGCAGTAGTTCTCCAGTTGGTAGAGGGAGCAAATGCTGGTGCAGCACTGATCCACAATGCCACGCTTTTTGCCGGGCAACCTCCAGTGCCAAGGTCTGAAGATCCCCGGCCTCCGGGCCTCCACCCAGCTCCAGTTGGGGCACTTGCGGGTCCTCCACTTCACGACGGGACTTGGGTGTGTAAAAAAAACCACGTTCCCCACAC 4 2 5' arm Rattus_norvegicus mirnest 100 100 -56.8 .......((...(((((((((..(((((.(((((.((((.((((.((((.((((..(.....)..)))).....)))).))))((((((........((((..((.....))..)))).....))))))......))))...)))))..)))))..)))))).))).))........ (-56.8)