mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCTGCTGCCTGCCTTTAGGA CTAACAGTGGGAGCAGGAGC CTTGTGGGAATCCTAACAGTGGGAGCAGGAGCTGCCTCTGCTTCTGCTGCCTGCCTTTAGGACCCTGTACC GGTCCGGATTCCCGGGAGAATCGACTAACCTGAGCCCAGAGGGGCTCAGAGGCTGAACCTCCAACCGGGGAGCCTGCATAGGACTGACCTAGGCCCTCCCCACATTAAGGTTGTGTAGCTTAGTCTTGTGGGAATCCTAACAGTGGGAGCAGGAGCTGCCTCTGCTTCTGCTGCCTGCCTTTAGGACCCTGTACCCCAACTGGGCTGCCTTGCTTAGCCTTAACAGAGGAGGTGCCTAGTCTAACTGCACTTGATATGCCATGGCTGGTTGATTTCCTCTGAGGCCTGACCTTTTCTGAGGAGAAGAGAAGAGAGGAGTGGGGCACAGGGTGTGGAGAGGAAAAGTGGCAGGGAGAGAGTTAAGGGAGGGGAAGCTGTGGTCGGGATGTAAGATAAATTTTAAAGACGTTAAAAGAAAAGTATTGCAAACACATGAAAATAATTGCTTGTAGACTCAAGTGAGCCCTGCAGGTAGAAGAATTACGGTGATTATCCTGTTTGTTTTAAATCTTTTAAGTTCTGTGTCAGTGATCTTTTATTACACAATAGTCCATTCTGAAATGCGACGACTGAAAACAACTTTAATTTTCTTCTTTACAGGGTTGGTTTGGTTTTGCTGTCATGAAGCCATTTTCAGCAGTAGTTTCCCCGGAGCTAGACATGTCTAAGACACCTTCAGTCACATTTACTGAGTTGGTTGGTAGTTGAGGGCTTTTTCTGAGAATCAAGTCAGGCCACTGCAAGAACAAGCGCGTGTGACTTCTGAGCCGTTCTTGACAGCCCCAGCTAAGTGCTTTTTGCACAAGTTCTTATTATTCAGCCTCTTCTTGGGCTTGTTACTTAAGGACTTGATCCCAGGCAATTTGGAGTGACAGGCTGATAAATGAGTTAGAGTCTGAATATCACAGGCCATGTTGCCAATACTTTATCCAGATAACAT 2 1 3' arm Rattus_norvegicus mirnest 100 mmu-mir-3098 0.0000000008 -28.3 .....(((..((((((..((((((((((((((.......))))))))).)))))..)))))))))...... (-28.3)