mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGGTTTTTTGTTTTCTTTT AGGAAAAGCACAAAGCAAGAC GTTGTTTTGGTTTTGGTTTTTTGTTTTCTTTTCTAGTGGATATGGAGAGCCTTCTTGCCCAACTAGATTGTTCACCATCAGCCTGGAACTCTCACTGACCCACCACAGAAACCGTGGTGATTTTCCACCAAGGGAAAGGAAAAGCACAAAGCAAGACCCGAACTA CCCTGAAAGAAGCAACAGCCCTGAAAACACAAGAAACATCTTCTACAAAGGAACCTCCCCCACGAGGGCTTATAAGGATTGAGTGACCGCCCTTCTTGTCATCATTTTGGTGACATCCCCACCCCCACCCCAAGACCACACATTTATTATAGTACCTTGTGCTCTTTTGGGTATTTTGTTGTTGTTTTGGTTTTGGTTTTTTGTTTTCTTTTCTAGTGGATATGGAGAGCCTTCTTGCCCAACTAGATTGTTCACCATCAGCCTGGAACTCTCACTGACCCACCACAGAAACCGTGGTGATTTTCCACCAAGGGAAAGGAAAAGCACAAAGCAAGACCCGAACTAATCTCATCATCTGAATAGTTCTTAAGGCCTGTCACTGAGACTTCGCAGAGGGCAGTATTAGGATAAAGTGGTCTCCTCCGATGTATAGTATTTAACTTTCTAAATGTGCCAACTTTGAAGTTTCTTTTTTTTTTTTTTCATTATAATTAGCGGTGGGAACCCAAAACACTACAGGTTTCCCCGGCAGCAGAGGCCACGCAGTATTATATAGTATTTATTTTTGCAGACTCTGCACCAGAAGAGCAGACTGGGCGGTGCTGATTACCACAGTACATCTACCATTTCAACTCTCAGACTCTGTGTAGCTGTGAGAGAGTGGTGTACAACCCCCTTGTCAGAGAAATGCTACTTCATTCAGAAGACGCCCGTGACTTTGTGGTAGCATAGGCCATTCTTGG 1 2 5' arm Rattus_norvegicus mirnest 100 100 -45.2 ...((((.(((((((.((((.(((((((((((((.(((((..(((.((((..(((.........)))..)))).)))((((..(((.....)))))))..((((((.......))))))....)))))....))))))))))).)).))))))))))).)))).. (-45.2)