mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTTC AAGACCCACTCCCCGGCGCCGCT GGGGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCACCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTTCCAGAGTCCGGATGCTTGGGA CTGAATTTAAGCATAGGAGTCAGCGGAGGATAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCGCCGCGGGGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCACCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTTCCAGAGTCCGGATGCTTGGGAAT 3 2 3' arm Rattus_norvegicus mirnest SSU_rRNA_eukarya 2e-68 mmu-mir-5105 1e-32 -65.4 .(((((.....((.(((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).))))))....))))))))))))))))))...)))))))))....)))))..))))).... (-65.4)