mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT GCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCACGTCCTTATGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGACTCGGGTTGCTTGGG GGGCGACCCGGTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTGAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCGCCGCGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCACGTCCTTATGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGACTCGGGTTGCTTGGGAATGCATCCCAGAGCGGGTGGTGAACTCCATCTAAAGCTAAGTACCGGCACGAGACCGATAGCCAACAAGTACCGTACGGGAAAGTTGAAAAGAACTTTGAAGAGAAAACGGAGTGCCGAGGGACGGACCATGTCTAAAA 3 2 3' arm Rattus_norvegicus mirnest SSU_rRNA_eukarya 8e-74 mmu-mir-5105 3e-30 -68.4 ((((..........))))..(((((((((....((((((((.(((....(((((((..((.(((((((.(((.(((...)))..)))....))))))).)).....))))))))))))))))))...)))))))))....((((((...)))))) (-68.4)