mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT TGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCANCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG TATTAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGGAAGAGCCCAGCGCCGAATCCCCGCCGCGCGCCGCGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCANCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAANGCTAAATACCGGCACGAGACCGATAGCCAACAAGTACCGTAAAGGGAAAGTTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTTAAGAGGTNANCGGGTGGGGTCC 3 2 3' arm Rattus_norvegicus mirnest SSU_rRNA_eukarya 3e-67 mmu-mir-5105 2e-33 -61.9 ..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))((((((..(((....)))..)).))))))....))))))))))))))))))...)))))))))....)))). (-61.9)