mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACTCCTCTTCTTCTTCAAT TCGAGAAGAACGAGTTTTG CGCCAAAGCAATCACTCCTCTTCTTCTTCAATTTCTGCTGATCTAGCTTATTATCTTTGAAAACAGAGCACGTACATACACTCAAAGCTTGTCCCAGGTTACCGAAGTTCGAGAAGAACGAGTTTTGGAAGCT CATATCTCCTCGGTTCCCAATGAGATATATCTTCTCAGTTTTCCCACTAAATCAATTTCAAAACCGAAAAATCTTCCTTATCTTTTTTGTTGTGGGGTAACGAAATCTTGGTTCTTCCCCAAATCTTCATGGCAGAAGAAATCGCCAAAGCAATCACTCCTCTTCTTCTTCAATTTCTGCTGATCTAGCTTATTATCTTTGAAAACAGAGCACGTACATACACTCAAAGCTTGTCCCAGGTTACCGAAGTTCGAGAAGAACGAGTTTTGGAAGCT 4 2 5' arm Eschscholzia_californica mirnest 100 100 -22.9 ..(((((......((((...((((((((.((((((.(.((((((....((....((((((.....................))))))..))....)))))).))))))).)))))))).)))))))))..... (-22.9)