mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCAGCATTCATGTCCGACAAC TGTGGATATGAATATGGGA AAGCCCCGGGACCAGCATTCATGTCCGACAACTGAGCAAAGGAGAGAATCATGGAAAAATCCATCTGTNNGGGGAGCCCAAAAGACTANCCGAAGTCAAATCAGTTCTCTTTGTGGATATGAATATGGGAAAAAGATG NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCATTTTTGCTCACATGACCCTAGGCCGGGCGCTCTCGGTGGCTTTCTGTANGTGGGCCCCTGACCTCACATTTGCAGCCTGCTCTGCTTGTGAACAGGGCTAACTGAGAAGCCTTACTGGGCCTTGCGCCTCCTTGGATGAGGTCTAAGGAGGGAGGTGGGAGGAAGGANGCTTCAAGCCCCGGGACCAGCATTCATGTCCGACAACTGAGCAAAGGAGAGAATCATGGAAAAATCCATCTGTNNGGGGAGCCCAAAAGACTANCCGAAGTCAAATCAGTTCTCTTTGTGGATATGAATATGGGAAAAAGATGCCCCCTACCCCTCACCCCCCTGGTGGAANGGGAACCTTGCACCTCTTTCCTGTTGACATGANATGCCCAACGTTNTTA 2 2 5' arm Rattus_norvegicus mirnest 100 100 -26.9 ...........(((..((((((((((.((((..(((.((..((.(((....((((....)))))))....(((...)))....((((......))))...))..))))).)))))))))))))).))).......... (-26.9)