mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACTCTGTAGACCAGGCTGG AGCCTGGCCCCAGACTGAGT TGCCGCAGAAGCAGCCTGGCCCCAGACTGAGTCGATATCTAGGGAAAGAGCAGAGGAAACAGAATAGCTCTGCAAACCTCAGTTGCTTCCACTCCCACAGCAGCCCTCGGTGGTCCTGAACTCACTCTGTAGACCAGGCTGGTCTCAGACT GCAACGAAGAAAATTAGTGCAGGGATTCAATTATGTCTCCCATTTTTAATGACAATTTTGCTCCCTCAGTAGATTAATTAGCAGCAGAGAATTCCTCCCCGAAAGCAAATCGTAGCACACTTTATAGCAAGAAAAGGTACATTAAAATGCAGCTGTGTCCCATTAAGCAGCCAGGCTCTGCAGCCTTCTGACCAGCGTGCCTGCTAGCGTAGGCTGGCCTCCCTCCCACCCTGTCTGGGAAGACTGAAGGAGGCCTCGGGAGAGATCTCTGACCTTGGCCTGAGAGCCAGAGCAGAACCAGAACTCCCACTTCCAAGCAAACCGTATGTGTGACGTGGGTACAGGGGTGTTCCACCTTGTTGCTTAGAGGAATTCAGGGAAGGACCTCTTCTTTTTATGCCGCAGAAGCAGCCTGGCCCCAGACTGAGTCGATATCTAGGGAAAGAGCAGAGGAAACAGAATAGCTCTGCAAACCTCAGTTGCTTCCACTCCCACAGCAGCCCTCGGTGGTCCTGAACTCACTCTGTAGACCAGGCTGGTCTCAGACTCCCAGAGATCCCCCTGCCTCTGCCTCCTAGGTGCTGGGAGGCACCTCAAAACAAACAAAAAACCCATCCTCATCCAGTTTAGTTTCATTCGTGTCTGAACAGAATCATCCTTCTGTGGACAAGCGGGGAGCGGTTTGGATGGAGTCAGATTCCAGAGTAGTCTCCAGACAGCAGCCTGGCTCACCAGTGGGCTGCTTTGCCGAAACCTGACTTATC 5 1 3' arm Rattus_norvegicus mirnest 100 mmu-mir-3470b 0.000007 -40.5 ......(((..((((((((...((((.(((((((.((((.((((...(((((((((...((((.....))))....))))...)))))...............)))).))))....)).))))).))))....)))))))).)))...... (-40.5)