mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGGCAGAGGCAGGAGGA TTCCTTTCTCTGACGTCCCG TCACCACTGTTTTTTCCTTTCTCTGACGTCCCGAGATCGAACCCAGAGCCTCACACTTGCAAGGCAAGTTCTCTCTCAACCAAGTGGCAACCCAACCCCGGTCTGCTAATAGAAAAGCATTTGGCAAAGCAGAGTTCAGAGAGGAGCCAGCTGTGGTGAGGCATGCTGGCATCCAGCTCTTGGGAGGCAGAGGCAGGAGGATAACTGCAAG TTTTTTTTTTTTTTTTTTCGGCATCGCTCTTTCCTTTATTAGGATAGAAGACCTTCAGAAGAACAGGCAGTACCATCTCGTTAGACAATTTTATTTATATAAGCATTATGCGCTGTGCAGAGGTGTGGCACGGAATCCATGGGGGGAGGTCAGAGAACAGCTCTGTGGAGTTCTCTCCTTCCACCATGGGTTTCAGAGATGGAGCTGAAGGGAGGCTTGTGAGGCGGCCTGCTGAGCCACCCGACTGTCCCTCACCACTGTTTTTTCCTTTCTCTGACGTCCCGAGATCGAACCCAGAGCCTCACACTTGCAAGGCAAGTTCTCTCTCAACCAAGTGGCAACCCAACCCCGGTCTGCTAATAGAAAAGCATTTGGCAAAGCAGAGTTCAGAGAGGAGCCAGCTGTGGTGAGGCATGCTGGCATCCAGCTCTTGGGAGGCAGAGGCAGGAGGATAACTGCAAGTTGAAGGGCATCTGGTGTACAAAGCAAGACCTTGCTTC 3 1 3' arm Rattus_norvegicus mirnest tRNA 0.00000001 mmu-mir-709 0.0002 -66.8 .......(((.(((((((.((((((...((((((((..((..((((.(((((((((..((..(((...((((((((.(((......((.(((.......))).((((((...........))))))..))...))).))))))))))).)).)).)))))))...))))..))....))))))))..)))))).))))))).....))).. (-66.8)