mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGGCAGAGGCAGGAGGATT TCTTCCATGCTTGTAGTCCCTGT GCCAGGTCTGTCTTCCATGCTTGTAGTCCCTGTGTTCAAGAGGCAGAGGCAGGAGGATTACTTCACCC GCCAGGTCTGTCTTCCATGCTTGTAGTCCCTGTGTTCAAGAGGCAGAGGCAGGAGGATTACTTCACCCAAGCTGTGTGCTAAAATCTAGTCTCAGACAAAAAGAGGGGTTTTCTTTCTTTTCTTTAAGACTGGAATAGTGTGGGGTTAGAGAGGATGGCCCCGCAGTTAACAGCATGGAAGCTGGTATGTTTTTGTGTTTTGCAGAAAGTTAAGTCATAGTGCCAGATATCTTCTAGGAAAGACTCTCTCATGAGTCTTGAGTTTAAAGTAAAGTTTAAAAGCATCTTTCTTGGTGAGGTGAGGAGCCCATACAGGGAGCACACCGAGAGGCGCCTTCTCTTGTGTGTATCTCCTCATGCGGAGTAGAAGCTGTGACTCTGACTCCACATGCCTTGTCCTCTGCTGGTGTTTCCCCGTGTGGAGTGGAAGGTGCCGTCCTGTGTGACTCAGAGGCCGTTTTCAGTTTGACATTAGCTGGTTCGTTACAGTAAGAGCTTACCAGCGGGTGGTTTAACTCCTTTCCAAAGTGGAGCAGCCTCTCAGTGTAAGCATTGGTGAGGCACAGGAAGCCGCCTGCTCTCCC 4 2 3' arm Rattus_norvegicus mirnest Metazoa_SRP 0.0008 mmu-mir-709 0.0007 -16.9 ....(((..(((((((.(((((...(((.((.......)).)))..)))))))))))).)))...... (-16.9)