mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGGGTTGGGGGCAGGGGACC GTCCCTGTCATCCTTTCCACCT TGGGGTCGGGGGTGGGTTGGGGGCAGGGGACCACCCCATCGGGAAGCCCCCAGTCCGCTGGGTCCCTGTCATCCTTTCCACCTCCAATACC CGACGCCAGTGGCTGGGCCTACCGATTCCCCATGGGCGAGTTCCGACTCTGTGACAGGCTGCAGAAGGGCAAGGTGTGCCCAGACGGAGACAAGTGCCGCTGTGCCCATGGACAAGAGGAGCTCAACGAGTGGCTGGACCGGCGTGAGGTGCTGAAGCAAAAGCTTGCCAAGGCCCGCAAGGACATGCTTCTGTGTCCACGGGATGATGACTTCGGCAAATACAACTTCCTGCTGCAAGAGGATGGGGACACCACTGGTGCCACCCCAGAAGCCACCGTTGCTGCAACTGCTACTGCTGCCACCACCACCACTGGGGAGTAGGGCCAGGTCTCAGCTATGGCAAAGTCCTGGGGTCGGGGGTGGGTTGGGGGCAGGGGACCACCCCATCGGGAAGCCCCCAGTCCGCTGGGTCCCTGTCATCCTTTCCACCTCCAATACCACCGGTGAGTGTACCCTCGTCATATACTGCGACCCCAAGTGGTCCATGTATCTTTGTCTTGTCCAATGGAGGCGGACCCTCCCAATTATAGTTCTCTTGCTGGGACAAGAGGTCTCAGGCCACTTCAACCTACGATATAATAGTGTCTGTCTTTAATAGTCCGAGATCCCGGTGGTGATGGTTGCCCCCCTGAAATAACAGCTGAAGATCTTTCCTTCCACTACTCCTCCTTCCTGGGTCGATGGAGCACAAAGCAGAGGATTACACCATAATCAGCGTGGAGAAT 5 1 5' arm Rattus_norvegicus mirnest 100 100 -40.9 .((.((.(((((((((..(((((((((((.....((((.((((..........)))).)))))))))))).)))..))))))))).)).)) (-40.9)